Say goodbye to days of fumbling for your passport.
Instead, use QR codes to clear immigration when arriving in Malaysia!
The use of QR code for immigration clearance at JB Checkpoint & Second Link Checkpoint can improve travel experience and ease congestion at the checkpoints.
Check out how you can use this QR code system in our guide below.
It’s easier than you think!
Malaysia has launched a new QR code immigration system called MyNIISe that will eventually replace MyBorderPass. The trial period runs from 22 September 2025 to 28 February 2026, and is available to travelers from 63 countries including Singapore.
Overview
Eligibility To Use QR Code At JB Checkpoint & Second Link Checkpoint
Before Reaching JB Checkpoint & Second Link Checkpoint
Generating QR Code For JB Immigration: Step-by-Step
At JB Checkpoint & Second Link Checkpoint
FAQs
Overview
Malaysia now offers a passport-less, two-QR-code immigration clearance system that aims to speed up the immigration process.
- MyBorderPass – The current system for Malaysians only
- MyNIISe – The new National Integrated Immigration System for Malaysians and foreign travelers from 63 countries (including Singapore)
Both systems are faster than autogates, reportedly taking only 5-7 seconds to clear!
MyNIISe Vs MyBorderPass
| Feature | MyBorderPass | MyNIISe (NEW) |
|---|---|---|
| Eligible Users | Malaysians only | Malaysians + 63 countries (including Singapore) |
| Group Travel | Each person scans individually | Single QR code for entire group |
| Vehicle Types | Bus passengers & motorcyclists only | Cars, motorcycles, buses, lorries |
| Trial Period | Fully operational | Sept 22, 2025 – Feb 28, 2026 |
| Future Plans | Will be replaced by MyNIISe | Will replace all existing QR systems |
Read Also: How To Cross From Singapore To JB Faster
Eligibility To Use QR Code At JB Checkpoint & Second Link Checkpoint
Are you eligible to use this new QR code system?
MyBorderPass (Current System)
- Malaysian citizens who have registered with MyBorderPass
- Currently limited to bus passengers and motorcyclists
MyNIISe (New System – Trial)
- Malaysians and travelers from 63 countries including Singapore, US, UK, Japan, South Korea, Saudi Arabia
- Available for cars, motorcycles, buses, and lorries
- Will eventually be mandatory for eligible travelers from January 1, 2026
Before Reaching JB Checkpoint & Second Link Checkpoint
To generate your QR code, you’ll need to download the app below on your phone.
Download the Apps:MyNIISe (Recommended): Available on App Store or Google Play Store (Android)
MyBorderPass: Available on App Store (Apple) or Google Play Store (Android)
Read Also: How To Clear Immigration With QR Codes At Woodlands & Tuas Checkpoints
MyNIISe: Generating QR Code For JB Immigration Step-By-Step
Step 1: Download MyNIISe app from your device’s app store
Step 2: Register for an account if you don’t have one
Step 3: Scan your passport details page to capture personal information
Step 4: Fill up your contact details
Step 5: Take a selfie for facial verification
Step 6: Set 4-digit PIN
Step 7: Generate either an individual QR code or a group QR code (for families/groups traveling together)
MyBorderPass: Generating QR Code For JB Immigration Step-By-Step
Step 1: Download MyBorderPass.
Step 2: Register for an account if you don’t have one.
Step 3: After registering, get the QR code on the app.
Note:
- Renewed your passport? MyBorderPass has an “Update Passport” feature.
At JB Checkpoint & Second Link Checkpoint
For MyNIISe Users (Cars, Motorcycles, Buses, Lorries)
Step 1: Queue at any MyBorderPass lanes.
Step 2: When it’s your turn, scan the QR code at the entrance. The first gate will open.
Step 3: Proceed to scan your face for verification.
Step 4: Once verified, the second gate will open. And you’re cleared to go!
Read Also: How To Use Autogate JB For Singapore Passport Holders
MyNIISe App Advantages:
- Group Clearance: Families and groups can use a single QR code instead of scanning individually
- More Vehicle Types: Works for cars, not just buses and motorcycles
- International Travelers: Open to Singaporeans and 62 other countries
- Future RTS Integration: Will support the upcoming Johor Bahru-Singapore Rapid Transit System with single-point clearance
For MyBorderPass Users (Bus Passengers & Motorcyclists)
Bus passengers must alight and proceed inside the checkpoint building for immigration clearance—even for QR code. Follow these 4 steps for a smooth clearance process as above.
You can check out this video guide for more info.
While MyBorderPass can be the quickest way to clear immigration, expect large crowds and queues during peak hours or busy periods.
If you don’t like the sound of standing in line at immigration, try taking a private taxi from Singapore to Johor Bahru instead. When you take a private taxi, immigration and customs clearance is done inside the vehicle.
Read Also: 7 Free & Best App To Check Causeway Traffic To Beat Singapore Malaysia Jam
Important Note (During Trial Period (Sept 22, 2025 – Feb 28, 2026):
- Both MyBorderPass and MyNIISe systems will operate in parallel.
- Travelers are encouraged to try MyNIISe for better efficiency.
- After trial period, MyNIISe will replace MyBorderPass entirely
- If you encounter issues using MyNIISe or MyBorderPass, simply proceed to the manual counters with your passport for clearance instead.
Things To Note:
- Physical passport is still mandatory and must be carried during travel
- MyNIISe or MyBorderPass is not mandatory. You can still use the autogates or manual counters at both JB checkpoints.
- If QR system fails, proceed to manual counters with your passport
- MyBorderPass QR code only supports one user per phone. You cannot do group QR codes.
- Kuala Lumpur International Airport (Terminals 1 & 2)
- Penang Airport
- Kuching Airport
- Kota Kinabalu Airport
- Integration with Johor Bahru-Singapore RTS Link (single immigration clearance)
FAQs:
Q1: What is the custom clearance app for Malaysia?
A1: MyNIISe app or MyBorderPass app
Q2: Which Johor land checkpoints accept MyNIISe or MyBorderPass QR code immigration clearance?
A2: QR code can be used at JB Checkpoint and Second Link Checkpoint.
Q3: Who can use MyBorderPass QR code to clear immigration at Johor land checkpoints?
A3: Currently only Malaysians are able to use it, and Malaysia immigration officials plan to expand usage to foreigners by the middle of 2025.
Q4: What's the process for generating a MyBorderPass QR code for Johor land checkpoint?
A4:
Step 1: Download the MyNIISe or MyBorderPass app (Google Play Store, Apple App Store) at home or before the journey.
Step 2: For new users, select the REGISTER NOW option
Step 3: Scan your passport details page to capture your personal information (name, IC number, gender, birth date, passport number and expiry date)
Step 4: Fill up your contact details
Step 5: Take a selfie for facial verification Step 6: Set 4 digit pin
Q5: What app should I use for Singapore-Malaysia land checkpoint for immigration clearance using QR codes?
A5: Singapore land checkpoint: Use the MyICA Mobile app Johor land checkpoint: Use the MyBorderPass app
Q6: When should travelers apply for QR codes before traveling to Johor Bahru, Malaysia?
A6: Just launch MyBorderPass app and the QR code automatically refreshes every 60 seconds.
Q7: How does MyBorderPass QR code scanning process work at checkpoints?
A7:
Step 1: Have MyBorderPass app with QR code ready
Step 2: Scan QR code at the gate entrance
Step 3: Proceed to face verification when first door opens
Step 4: Exit through second door after verification completes
Q8: Who can use MyBorderPass at Johor land checkpoints?
A8: Currently, bus passengers and motorcyclists only can use MyBorderPass App at JB Checkpoint and Second Link Checkpoint.
Q9: Are passengers traveling by bus able to use MyBorderPass QR codes when clearing immigration at JB Checkpoint and Second Link Checkpoint?
A9: Yes, bus passengers can use QR codes but must disembark, clear immigration using QR lanes, then return to their bus.
Q10: Do I need to bring passport when using MyNIISe or MyBorderPass QR code at Johor land checkpoints?
A10: Yes. The QR code only speeds up immigration clearance at Johor land checkpoint. Your passport remains the required official travel document.
Q11: Who can use MyNIISe QR code to clear immigration at Johor land checkpoints?
A11: Malaysians and travellers from 63 eligible countries, including Singapore, can use the MyNIISe QR code system to clear immigration at Johor land checkpoints. During the trial, it is available at BSI and KSAB and supports both individual and group travel with a single QR code.
Q12: Can families travel together with one QR code?
A12: Yes, but only with MyNIISe. MyBorderPass requires each person to scan individually.
Q13:What vehicles can use the QR systems?
A13: MyNIISe supports cars, motorcycles, buses, and lorries. MyBorderPass is limited to bus passengers and motorcyclists.
